Tutorials

The tutorials walk through the core API and then through each prebuilt model. Notebook outputs are rendered as-saved — to re-run them yourself, install the notebook extra and run the .ipynb files in docs/source/notebooks/.

• Quickstart — Hyperiax in five minutes
• Writing your own sweeps
• Phylogenetic mean on a real tree
• Bayesian phylogenetic inference with discrete BFFG
• Gaussian MCMC — BFFG with a hand-rolled kernel
• Gaussian NUTS — and what its existence proves
• Shape inference — Kunita flows with non-linear transitions