Usage

• Build a tree in Hyperiax
  • Build a tree with a simple topology
  • Build a tree from a Newick string
  • Summary
• Execute basic operations on the tree
  • Simulate the tree (downwards)
  • Estimate the inner nodes (upwards)
  • Using prebuilts to finish them all in once
  • Summary
• Estimation of internal nodes and phylogenetic mean from shape observations
  • Load the example data
  • Prepare tree for computing
  • Estimate inner nodes (i.e. ancestral shapes)
  • Summary
• MCMC parameter inference using backward filtering, forward guiding
  • Build a Gaussian tree with constant node-dependent covariances
  • Estimate variance using MCMC